PoplarV1, Main, Exploration, bibRecord, 003864

Microgenomic analysis reveals cell type-specific gene expression patterns between ray and fusiform initials within the cambial meristem of Populus.

Identifieur interne : 003864 ( Main/Exploration ); précédent : 003863; suivant : 003865

Microgenomic analysis reveals cell type-specific gene expression patterns between ray and fusiform initials within the cambial meristem of Populus.

Auteurs : Nadia Goué [France] ; Marie-Claude Lesage-Descauses ; Ewa J. Mellerowicz ; Elisabeth Magel ; Philippe Label ; Björn Sundberg

Source :

The New phytologist [ 1469-8137 ] ; 2008.

RBID : pubmed:18631289

Descripteurs français

English descriptors

KwdEn :
- Biological Transport (MeSH), Carbohydrate Metabolism (genetics), Cell Differentiation (genetics), Cell Wall (metabolism), Databases, Genetic (MeSH), Gene Expression Profiling (MeSH), Genomics (MeSH), Meristem (genetics), Meristem (metabolism), Oligonucleotide Array Sequence Analysis (MeSH), Phloem (metabolism), Photosynthesis (genetics), Plant Proteins (genetics), Plant Proteins (metabolism), Populus (cytology), Populus (genetics), Populus (metabolism), RNA, Messenger (metabolism), Reverse Transcriptase Polymerase Chain Reaction (MeSH), Xylem (metabolism).
MESH :
- chemical , genetics : Plant Proteins.
- cytology : Populus.
- genetics : Carbohydrate Metabolism, Cell Differentiation, Meristem, Photosynthesis, Populus.
- metabolism : Cell Wall, Meristem, Phloem, Plant Proteins, Populus, RNA, Messenger, Xylem.
- Biological Transport, Databases, Genetic, Gene Expression Profiling, Genomics, Oligonucleotide Array Sequence Analysis, Reverse Transcriptase Polymerase Chain Reaction.

Abstract

The vascular cambium is the meristem in trees that produce wood. This meristem consists of two types of neighbouring initials: fusiform cambial cells (FCCs), which give rise to the axial cell system (i.e. fibres and vessel elements), and ray cambial cells (RCCs), which give rise to rays. There is little molecular information on the mechanisms whereby the differing characteristics of these neighbouring cells are maintained. A microgenomic approach was adopted in which the transcriptomes of FCCs and RCCs dissected out from the cambial meristem of poplar (Populus trichocarpa x Populus deltoïdes var. Boelare) were analysed, and a transcriptional database for these two cell types established. Photosynthesis genes were overrepresented in RCCs, providing molecular support for the presence of photosynthetic systems in rays. Genes that putatively encode transporters (vesicle, lipid and metal ion transporters and aquaporins) in RCCs were also identified. In addition, many cell wall-related genes showed cell type-specific expression patterns. Notably, genes involved in pectin metabolism and xyloglucan metabolism were overrepresented in RCCs and FCCs, respectively. The results demonstrate the use of microgenomics to reveal differences in biological processes in neighbouring meristematic cells, and to identify key genes involved in these processes.

DOI: 10.1111/j.1469-8137.2008.02556.x
PubMed: 18631289

Affiliations:

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Le document en format XML

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<term>Carbohydrate Metabolism (genetics)</term>
<term>Cell Differentiation (genetics)</term>
<term>Cell Wall (metabolism)</term>
<term>Databases, Genetic (MeSH)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Genomics (MeSH)</term>
<term>Meristem (genetics)</term>
<term>Meristem (metabolism)</term>
<term>Oligonucleotide Array Sequence Analysis (MeSH)</term>
<term>Phloem (metabolism)</term>
<term>Photosynthesis (genetics)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Populus (cytology)</term>
<term>Populus (genetics)</term>
<term>Populus (metabolism)</term>
<term>RNA, Messenger (metabolism)</term>
<term>Reverse Transcriptase Polymerase Chain Reaction (MeSH)</term>
<term>Xylem (metabolism)</term>
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<term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Bases de données génétiques (MeSH)</term>
<term>Différenciation cellulaire (génétique)</term>
<term>Génomique (MeSH)</term>
<term>Méristème (génétique)</term>
<term>Méristème (métabolisme)</term>
<term>Métabolisme glucidique (génétique)</term>
<term>Paroi cellulaire (métabolisme)</term>
<term>Phloème (métabolisme)</term>
<term>Photosynthèse (génétique)</term>
<term>Populus (cytologie)</term>
<term>Populus (génétique)</term>
<term>Populus (métabolisme)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>RT-PCR (MeSH)</term>
<term>Séquençage par oligonucléotides en batterie (MeSH)</term>
<term>Transport biologique (MeSH)</term>
<term>Xylème (métabolisme)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term>
</keywords>
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</keywords>
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</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Carbohydrate Metabolism</term>
<term>Cell Differentiation</term>
<term>Meristem</term>
<term>Photosynthesis</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Différenciation cellulaire</term>
<term>Méristème</term>
<term>Métabolisme glucidique</term>
<term>Photosynthèse</term>
<term>Populus</term>
<term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Cell Wall</term>
<term>Meristem</term>
<term>Phloem</term>
<term>Plant Proteins</term>
<term>Populus</term>
<term>RNA, Messenger</term>
<term>Xylem</term>
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<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>ARN messager</term>
<term>Méristème</term>
<term>Paroi cellulaire</term>
<term>Phloème</term>
<term>Populus</term>
<term>Protéines végétales</term>
<term>Xylème</term>
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<keywords scheme="MESH" xml:lang="en"><term>Biological Transport</term>
<term>Databases, Genetic</term>
<term>Gene Expression Profiling</term>
<term>Genomics</term>
<term>Oligonucleotide Array Sequence Analysis</term>
<term>Reverse Transcriptase Polymerase Chain Reaction</term>
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<keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term>
<term>Bases de données génétiques</term>
<term>Génomique</term>
<term>RT-PCR</term>
<term>Séquençage par oligonucléotides en batterie</term>
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<front><div type="abstract" xml:lang="en">The vascular cambium is the meristem in trees that produce wood. This meristem consists of two types of neighbouring initials: fusiform cambial cells (FCCs), which give rise to the axial cell system (i.e. fibres and vessel elements), and ray cambial cells (RCCs), which give rise to rays. There is little molecular information on the mechanisms whereby the differing characteristics of these neighbouring cells are maintained. A microgenomic approach was adopted in which the transcriptomes of FCCs and RCCs dissected out from the cambial meristem of poplar (Populus trichocarpa x Populus deltoïdes var. Boelare) were analysed, and a transcriptional database for these two cell types established. Photosynthesis genes were overrepresented in RCCs, providing molecular support for the presence of photosynthetic systems in rays. Genes that putatively encode transporters (vesicle, lipid and metal ion transporters and aquaporins) in RCCs were also identified. In addition, many cell wall-related genes showed cell type-specific expression patterns. Notably, genes involved in pectin metabolism and xyloglucan metabolism were overrepresented in RCCs and FCCs, respectively. The results demonstrate the use of microgenomics to reveal differences in biological processes in neighbouring meristematic cells, and to identify key genes involved in these processes.</div>
</front>
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Microgenomic analysis reveals cell type-specific gene expression patterns between ray and fusiform initials within the cambial meristem of Populus.

Microgenomic analysis reveals cell type-specific gene expression patterns between ray and fusiform initials within the cambial meristem of Populus.

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Descripteurs français

English descriptors

Abstract

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